PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss00630.1
Common NameLR48_Vigan406s007300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 197aa    MW: 21294.2 Da    PI: 10.7562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss00630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2071121256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  Vang0069ss00630.1  71 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 121
                        69*******.**********32....25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-1570129No hitNo description
PROSITE profilePS5103222.62971128IPR001471AP2/ERF domain
SMARTSM003803.4E-3271134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2971128IPR001471AP2/ERF domain
PfamPF008472.0E-1471120IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2271128IPR016177DNA-binding domain
PRINTSPR003676.5E-117283IPR001471AP2/ERF domain
PRINTSPR003676.5E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNDEIYLHAP TTATATAANV LLPKPETVSS HETGLEGIAA VVGEHVLFGT SSTLHVPETP  60
KKTAGVSVNK SYRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA YDAAARRLRG  120
AKARTNFKIP SVLPLSPSSE GGVVKPKAAR NNARKCSSVE QLFSGVPQVR RNDGGGENLN  180
VDVNLKLDVR NSRMVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-1670129464ATERF1
2gcc_A2e-1670129464ATERF1
1gcc_A2e-1670129161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515223.11e-116PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M58e-32ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0S3T0V51e-143A0A0S3T0V5_PHAAN; Uncharacterized protein
TrEMBLA0A0L9T9K51e-143A0A0L9T9K5_PHAAN; Uncharacterized protein
STRINGGLYMA08G23074.11e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-28ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]